Felix the Cat
01-28-2007, 02:10 PM
http://www.newscientist.com/channel/life/mg19325861.200-the-ancestor-within-all-creatures.html
From October to April every year, fishermen in Taiji in Japan herd schools of dolphins and porpoises into shallow bays and slaughter them for food. Each year they kill around 20,000 animals. That would have been the fate of one particular dolphin, a bottlenose that scientists now call AO-4, had fishermen not spotted something rather unusual about it.
What saved the dolphin's life was an extra pair of flippers. In addition to the usual front pair, it had a smaller pair at the back. Experts were quick to point out that these were similar to the hind flippers seen in early dolphin fossils. "It looks like the dolphins' ancestors from 40 million years ago," says Johannes Thewissen, an expert on cetacean evolution at Northeastern Ohio Universities College of Medicine in Rootstown.
The press lapped it up, reporting the dolphin as an "evolutionary throwback". The idea made for a great story, but is there any credibility in it?
The description of any animal as an "evolutionary throwback" is controversial. For the better part of a century most biologists have been reluctant to use those words, mindful of a principle of evolution that says "evolution cannot run backwards". But as more and more examples come to light and modern genetics enters the scene, that principle is having to be rewritten. Not only are evolutionary throwbacks possible, they sometimes play an important role in the forward march of evolution.
The technical term for an evolutionary throwback is an atavism, from the Latin atavus, meaning forefather. The word has ugly connotations thanks largely to Cesare Lombroso, a 19th-century Italian medic who argued that criminals were born not made and could be identified by physical features such as low foreheads and long arms that were throwbacks to a primitive, sub-human state.
While Lombroso was busy measuring criminals, a Belgian palaeontologist called Louis Dollo was studying the fossil record and coming to the opposite conclusion. In 1890 he proposed that evolution was irreversible: that "an organism is unable to return, even partially, to a previous stage already realised in the ranks of its ancestors". Early 20th-century biologists came to a similar conclusion, though they couched it in terms of probability - there is no reason why evolution cannot run backwards, it is just vanishingly unlikely. And so the idea of irreversibility in evolution stuck and came to be known as "Dollo's Law".
If Dollo's Law is right, atavisms should occur only very rarely, if at all. Yet almost since the idea took root exceptions have been cropping up. In 1919, for example, a humpback whale with a pair of leg-like appendages over a metre long, complete with a full set of limb bones, was caught off Vancouver Island in Canada. Explorer Roy Chapman Andrews argued at the time that the whale must be a throwback to a land-living ancestor. "I can see no other explanation," he wrote in 1921.
Since then so many other examples have been discovered that it no longer makes sense to say that evolution is as good as irreversible. And this poses a puzzle: how can characteristics that disappeared millions of years ago suddenly reappear?
In 1994, Rudolf Raff and colleagues at Indiana University in Bloomington decided to use genetics to put a number on the probability of evolution going into reverse. They reasoned that while some evolutionary changes involve the loss of genes and are therefore irreversible, others may be the result of genes being switched off. If these "silent genes" are somehow switched back on, they argued, long-lost traits could reappear.
Raff's team went on to calculate the likelihood of it happening. Silent genes accumulate random mutations, they reasoned, eventually rendering them useless. So how long can a gene survive in a species if it is no longer used? The team calculated that there is a good chance of silent genes surviving for up to 6 million years in at least a few individuals in a population, and that some might survive as long as 10 million years. In other words, throwbacks are possible, but only to the relatively recent evolutionary past.
As a possible example, the team pointed to the mole salamanders of Mexico and California. Like most amphibians these begin life in a juvenile "tadpole" state then metamorphose into the adult form - except for one species, the axolotl, which famously lives its entire life as a juvenile. The simplest explanation for this is that the axolotl lineage alone lost the ability to metamorphose, while others retained it. From a detailed analysis of the salamanders' family tree, however, it is clear that the other lineages evolved from an ancestor that itself had lost the ability to metamorphose. In other words, metamorphosis in mole salamanders is an atavism. In fact, metamorphosis appears to have flickered on and off across the group for 10 million years, with some species losing the ability only for their descendants to regain it.
The salamander example fits with Raff's 10-million-year time frame. More recently, however, examples have been reported that break the time limit, suggesting that maybe silent genes are not the whole story.
In a paper published last year, biologist Gunter Wagner of Yale University reported some work on the evolutionary history of a group of South American lizards called Bachia. Many of these have minuscule limbs; some look more like snakes than lizards and a few have completely lost the toes on their hind limbs. Other species, however, sport up to four toes on their hind legs.
The simplest explanation is that the toed lineages never lost their toes, but Wagner begs to differ. According to his analysis of the Bachia family tree, the toed species re-evolved toes from toeless ancestors. What is more, digit loss and gain has occurred more than once over tens of millions of years. "In this particular case, we have disproved Dollo's Law," Wagner says (Evolution, vol 60, p 1896). Another recent paper suggests that stick insects lost their wings 300 million years ago, only for some lineages to re-evolve them at various later dates (Nature, vol 421, p 264).
So what's going on? One possibility is that these traits simply re-evolve from scratch in much the same way that similar structures can independently arise in unrelated species, such as the dorsal fins of sharks and killer whales. Another more intriguing possibility is that the genetic information needed to make toes or wings somehow survived for tens or perhaps hundreds of millions of years in the lizards and stick insects and was reactivated. These atavistic traits provided an advantage and spread through the population, effectively reversing evolution.
But if silent genes degrade within 6 to 10 million years, how can long-lost traits be reactivated over longer timescales? The answer may lie in the womb.
Early embryos of many species develop ancestral features. Snake embryos, for example, sprout hind limb buds, as do whale and dolphin embryos. Human embryos have a tail bud. Later in development these features disappear thanks to developmental programs that say "lose the leg" or "lose the tail".
Ancestral mystery
If this "lose it" program goes wrong, however, perhaps through a mutation, the ancestral feature may not disappear. "If this mechanism is released, you get what can legitimately be called an atavism," says Wagner. Perhaps that is what happened to the Japanese dolphin; it could also explain why adult whales and dolphins sometimes have bony lumps where their hind limb buds were, and why snakes with hind limbs are caught from time to time.
But why retain ancestral structures and start building them in early development only to get rid of them later? In some cases, primitive features still play a role in development. For example, vertebrate embryos develop a notochord, a cartilaginous spine similar to that of early vertebrates, which then acts as a template for the backbone proper. "It has a vital embryonic function even though it has no adult function," says Brian Hall, a biologist at Dalhousie University in Canada who has studied atavisms.
Other transient embryonic features such as the hind limb buds of whales are harder to explain. One possibility is that they play an as-yet unknown role in development. Another possibility, says developmental biologist Jonathan Slack of the University of Bath, UK, is that they are there because there has never been any evolutionary pressure to eliminate them. "The tail bud is there because it was there, not because there is any particular function for it," Slack says.
Hens' teeth and hairy faces
This, though, raises another question: why haven't the genes that initiate limb or tail development fallen into disrepair like any other silent gene? The answer may be that they are not really silent.
Even when a structure is no longer needed, the genes involved can be conserved as long as they are also needed to make other parts of the body. As Hall points out, there is no such thing as a gene for a leg or a tail. Instead there are genes that form the underlying patterns of numerous structures and many of the same genes are involved in laying down quite different body parts. In birds, bats and insects, for example, wings are a variation on the theme of legs. Hair, teeth, feathers and scales are also all variations on a theme - which is why some disorders cause hair to sprout from people's gums.
What that means is that the genes needed to make a long-lost trait are not always "silent" and can survive for much longer than the 10 million year limit estimated by Raff. And if the genes are still there, it is plausible that ancient developmental programs can spring back to life.
There are some examples. Birds lost their teeth around 70 million years ago, yet in a famous experiment in 1980, Edward Kollar of the University of Connecticut managed to coax chicken cells to grow into rudimentary teeth by grafting them onto mouse jaw tissue (Science, vol 207, p 993). Kollar interpreted this to mean that he had somehow reawakened a dormant genetic program, but the results were controversial: critics like Raff suggested that the so-called "hens' teeth" were just an artefact. Last year, though, the critics were silenced when John Fallon at the University of Wisconsin described a mutation that triggers the development of crocodile-like teeth in chicken embryos (Current Biology, vol 16, p 371). "I would be cautious," says Fallon, who talks of "tooth-like structures" rather than teeth. "But when push comes to shove, I'd call it an atavism."
Even if the hens' teeth genes have survived because they are used in other parts of the body, this doesn't explain everything. It is still surprising that they can be switched back on in the right place and in the right order to recreate a long-lost feature. "I don't know how it's possible," Fallon admits.
So if atavisms are genuine throwbacks and appear in all sorts of animals, what about us? It's roughly 6 million years since our lineage split from chimpanzees, and we have evolved rapidly in this time. Our fingers and palms have become shorter and our thumbs longer, stronger and more flexible. We've lost our fur and gained many more sweat glands. We have become bipedal and, of course, acquired language and unique cognitive skills.
There are plenty of cases in the medical literature in which these body parts appear to have reverted to the ancestral state, from large canines to chimp-like toes. Some behaviours, too, appear to be throwbacks to an ancestral state (see "Human throwbacks - or not?"). But are any of these really atavisms? Until genetic analysis reveals whether these conditions are genuine reversions, rather than developmental disorders that happen to resemble ape features or behaviours, it is hard to say for sure. But there are some cases where the evidence points to a firm conclusion.
One condition often cited as an atavism, for example, is "werewolf syndrome", or hypertrichosis, a group of very rare conditions in which the entire face and other parts of the body are covered in thick hair. Take a look at a chimp or gorilla, and you'll see they have less facial hair than many ecologists. There is even one report of a gibbon - another ape with a hairless face - with hypertrichosis. So if these conditions are an atavism, it's certainly not a reversion to our recent ape ancestors.
Driving evolution forward
Another possibility is that some behavioural syndromes are atavisms. In 2002 researchers at Leiden University in the Netherlands suggested that cataplexy, a condition in which strong emotions cause the muscles to suddenly go limp, is a throwback to an ancestral "fright paralysis" response similar to rabbits freezing in headlights. Similarly, our habit of moving our mouths when using our hands for tricky tasks such as sewing could reflect the behaviour of our simian ancestors, who usually use their mouths and hands together. Until we start to understand the genetic basis of instincts and behaviours, though, ideas like this remain unproven.
There is one bizarre condition, however, that is almost certainly a human atavism. There are more than 100 reports in the literature of babies born with tails (http://www.thephora.net/forum/showthread.php?t=9928). Some are no more than fatty appendages, but others consist of extra vertebrae, ligaments and muscle, and can even move - though as most are removed soon after birth, it's not clear whether this movement is voluntary or not.
"This is quite clearly an atavism," says Bernhard Herrmann of the Max Planck Institute for Molecular Genetics in Berlin, Germany, who studies the development of the vertebral column. "The ability to make tails is a feature of all vertebrates."
As the embryo develops and elongates, a series of segments is laid down, he says. The first ones turn into the torso, while later ones become the tail, but exactly the same initial process - and the same set of genes - is involved. In humans the process stops early. But if something disrupts the "stop" signal, the elongation process may continue. "There is an inherent timing mechanism in the embryo that causes the tail to stop growing at the appropriate time for each species," says Andrew Copp of the Institute of Child Health in London, who has helped identify some of the genes involved in tail formation.
Once formed, the embryonic tail in humans self-destructs via a process of programmed cell death, and the vertebrae in the rudimentary tail visible in 5-week embryos fuse to form the coccyx. Human tails could result from excessive elongation, or the failure of the self-destruct mechanism, or maybe a bit of both - the mutations responsible have not been identified.
Whether human tails resemble those of our ape ancestors is unclear. Fossil teeth are all that have been found of most transitional species between monkeys and apes, so when and why our ancestors lost their tails remains a mystery.
Whichever human conditions turn out to be atavisms - and we won't know for sure until the genetics of each of them is unravelled - it's apparent that they are far more common than biologists once believed. They are lurking within all our genomes, ready to emerge if anything goes awry during development. And in some cases, far from being a backward step, they prove to be advantageous and can spread through a species, driving evolution forward by making it go backwards. If humans ever have to return to the trees, our long-lost tails may be returning with us.
From October to April every year, fishermen in Taiji in Japan herd schools of dolphins and porpoises into shallow bays and slaughter them for food. Each year they kill around 20,000 animals. That would have been the fate of one particular dolphin, a bottlenose that scientists now call AO-4, had fishermen not spotted something rather unusual about it.
What saved the dolphin's life was an extra pair of flippers. In addition to the usual front pair, it had a smaller pair at the back. Experts were quick to point out that these were similar to the hind flippers seen in early dolphin fossils. "It looks like the dolphins' ancestors from 40 million years ago," says Johannes Thewissen, an expert on cetacean evolution at Northeastern Ohio Universities College of Medicine in Rootstown.
The press lapped it up, reporting the dolphin as an "evolutionary throwback". The idea made for a great story, but is there any credibility in it?
The description of any animal as an "evolutionary throwback" is controversial. For the better part of a century most biologists have been reluctant to use those words, mindful of a principle of evolution that says "evolution cannot run backwards". But as more and more examples come to light and modern genetics enters the scene, that principle is having to be rewritten. Not only are evolutionary throwbacks possible, they sometimes play an important role in the forward march of evolution.
The technical term for an evolutionary throwback is an atavism, from the Latin atavus, meaning forefather. The word has ugly connotations thanks largely to Cesare Lombroso, a 19th-century Italian medic who argued that criminals were born not made and could be identified by physical features such as low foreheads and long arms that were throwbacks to a primitive, sub-human state.
While Lombroso was busy measuring criminals, a Belgian palaeontologist called Louis Dollo was studying the fossil record and coming to the opposite conclusion. In 1890 he proposed that evolution was irreversible: that "an organism is unable to return, even partially, to a previous stage already realised in the ranks of its ancestors". Early 20th-century biologists came to a similar conclusion, though they couched it in terms of probability - there is no reason why evolution cannot run backwards, it is just vanishingly unlikely. And so the idea of irreversibility in evolution stuck and came to be known as "Dollo's Law".
If Dollo's Law is right, atavisms should occur only very rarely, if at all. Yet almost since the idea took root exceptions have been cropping up. In 1919, for example, a humpback whale with a pair of leg-like appendages over a metre long, complete with a full set of limb bones, was caught off Vancouver Island in Canada. Explorer Roy Chapman Andrews argued at the time that the whale must be a throwback to a land-living ancestor. "I can see no other explanation," he wrote in 1921.
Since then so many other examples have been discovered that it no longer makes sense to say that evolution is as good as irreversible. And this poses a puzzle: how can characteristics that disappeared millions of years ago suddenly reappear?
In 1994, Rudolf Raff and colleagues at Indiana University in Bloomington decided to use genetics to put a number on the probability of evolution going into reverse. They reasoned that while some evolutionary changes involve the loss of genes and are therefore irreversible, others may be the result of genes being switched off. If these "silent genes" are somehow switched back on, they argued, long-lost traits could reappear.
Raff's team went on to calculate the likelihood of it happening. Silent genes accumulate random mutations, they reasoned, eventually rendering them useless. So how long can a gene survive in a species if it is no longer used? The team calculated that there is a good chance of silent genes surviving for up to 6 million years in at least a few individuals in a population, and that some might survive as long as 10 million years. In other words, throwbacks are possible, but only to the relatively recent evolutionary past.
As a possible example, the team pointed to the mole salamanders of Mexico and California. Like most amphibians these begin life in a juvenile "tadpole" state then metamorphose into the adult form - except for one species, the axolotl, which famously lives its entire life as a juvenile. The simplest explanation for this is that the axolotl lineage alone lost the ability to metamorphose, while others retained it. From a detailed analysis of the salamanders' family tree, however, it is clear that the other lineages evolved from an ancestor that itself had lost the ability to metamorphose. In other words, metamorphosis in mole salamanders is an atavism. In fact, metamorphosis appears to have flickered on and off across the group for 10 million years, with some species losing the ability only for their descendants to regain it.
The salamander example fits with Raff's 10-million-year time frame. More recently, however, examples have been reported that break the time limit, suggesting that maybe silent genes are not the whole story.
In a paper published last year, biologist Gunter Wagner of Yale University reported some work on the evolutionary history of a group of South American lizards called Bachia. Many of these have minuscule limbs; some look more like snakes than lizards and a few have completely lost the toes on their hind limbs. Other species, however, sport up to four toes on their hind legs.
The simplest explanation is that the toed lineages never lost their toes, but Wagner begs to differ. According to his analysis of the Bachia family tree, the toed species re-evolved toes from toeless ancestors. What is more, digit loss and gain has occurred more than once over tens of millions of years. "In this particular case, we have disproved Dollo's Law," Wagner says (Evolution, vol 60, p 1896). Another recent paper suggests that stick insects lost their wings 300 million years ago, only for some lineages to re-evolve them at various later dates (Nature, vol 421, p 264).
So what's going on? One possibility is that these traits simply re-evolve from scratch in much the same way that similar structures can independently arise in unrelated species, such as the dorsal fins of sharks and killer whales. Another more intriguing possibility is that the genetic information needed to make toes or wings somehow survived for tens or perhaps hundreds of millions of years in the lizards and stick insects and was reactivated. These atavistic traits provided an advantage and spread through the population, effectively reversing evolution.
But if silent genes degrade within 6 to 10 million years, how can long-lost traits be reactivated over longer timescales? The answer may lie in the womb.
Early embryos of many species develop ancestral features. Snake embryos, for example, sprout hind limb buds, as do whale and dolphin embryos. Human embryos have a tail bud. Later in development these features disappear thanks to developmental programs that say "lose the leg" or "lose the tail".
Ancestral mystery
If this "lose it" program goes wrong, however, perhaps through a mutation, the ancestral feature may not disappear. "If this mechanism is released, you get what can legitimately be called an atavism," says Wagner. Perhaps that is what happened to the Japanese dolphin; it could also explain why adult whales and dolphins sometimes have bony lumps where their hind limb buds were, and why snakes with hind limbs are caught from time to time.
But why retain ancestral structures and start building them in early development only to get rid of them later? In some cases, primitive features still play a role in development. For example, vertebrate embryos develop a notochord, a cartilaginous spine similar to that of early vertebrates, which then acts as a template for the backbone proper. "It has a vital embryonic function even though it has no adult function," says Brian Hall, a biologist at Dalhousie University in Canada who has studied atavisms.
Other transient embryonic features such as the hind limb buds of whales are harder to explain. One possibility is that they play an as-yet unknown role in development. Another possibility, says developmental biologist Jonathan Slack of the University of Bath, UK, is that they are there because there has never been any evolutionary pressure to eliminate them. "The tail bud is there because it was there, not because there is any particular function for it," Slack says.
Hens' teeth and hairy faces
This, though, raises another question: why haven't the genes that initiate limb or tail development fallen into disrepair like any other silent gene? The answer may be that they are not really silent.
Even when a structure is no longer needed, the genes involved can be conserved as long as they are also needed to make other parts of the body. As Hall points out, there is no such thing as a gene for a leg or a tail. Instead there are genes that form the underlying patterns of numerous structures and many of the same genes are involved in laying down quite different body parts. In birds, bats and insects, for example, wings are a variation on the theme of legs. Hair, teeth, feathers and scales are also all variations on a theme - which is why some disorders cause hair to sprout from people's gums.
What that means is that the genes needed to make a long-lost trait are not always "silent" and can survive for much longer than the 10 million year limit estimated by Raff. And if the genes are still there, it is plausible that ancient developmental programs can spring back to life.
There are some examples. Birds lost their teeth around 70 million years ago, yet in a famous experiment in 1980, Edward Kollar of the University of Connecticut managed to coax chicken cells to grow into rudimentary teeth by grafting them onto mouse jaw tissue (Science, vol 207, p 993). Kollar interpreted this to mean that he had somehow reawakened a dormant genetic program, but the results were controversial: critics like Raff suggested that the so-called "hens' teeth" were just an artefact. Last year, though, the critics were silenced when John Fallon at the University of Wisconsin described a mutation that triggers the development of crocodile-like teeth in chicken embryos (Current Biology, vol 16, p 371). "I would be cautious," says Fallon, who talks of "tooth-like structures" rather than teeth. "But when push comes to shove, I'd call it an atavism."
Even if the hens' teeth genes have survived because they are used in other parts of the body, this doesn't explain everything. It is still surprising that they can be switched back on in the right place and in the right order to recreate a long-lost feature. "I don't know how it's possible," Fallon admits.
So if atavisms are genuine throwbacks and appear in all sorts of animals, what about us? It's roughly 6 million years since our lineage split from chimpanzees, and we have evolved rapidly in this time. Our fingers and palms have become shorter and our thumbs longer, stronger and more flexible. We've lost our fur and gained many more sweat glands. We have become bipedal and, of course, acquired language and unique cognitive skills.
There are plenty of cases in the medical literature in which these body parts appear to have reverted to the ancestral state, from large canines to chimp-like toes. Some behaviours, too, appear to be throwbacks to an ancestral state (see "Human throwbacks - or not?"). But are any of these really atavisms? Until genetic analysis reveals whether these conditions are genuine reversions, rather than developmental disorders that happen to resemble ape features or behaviours, it is hard to say for sure. But there are some cases where the evidence points to a firm conclusion.
One condition often cited as an atavism, for example, is "werewolf syndrome", or hypertrichosis, a group of very rare conditions in which the entire face and other parts of the body are covered in thick hair. Take a look at a chimp or gorilla, and you'll see they have less facial hair than many ecologists. There is even one report of a gibbon - another ape with a hairless face - with hypertrichosis. So if these conditions are an atavism, it's certainly not a reversion to our recent ape ancestors.
Driving evolution forward
Another possibility is that some behavioural syndromes are atavisms. In 2002 researchers at Leiden University in the Netherlands suggested that cataplexy, a condition in which strong emotions cause the muscles to suddenly go limp, is a throwback to an ancestral "fright paralysis" response similar to rabbits freezing in headlights. Similarly, our habit of moving our mouths when using our hands for tricky tasks such as sewing could reflect the behaviour of our simian ancestors, who usually use their mouths and hands together. Until we start to understand the genetic basis of instincts and behaviours, though, ideas like this remain unproven.
There is one bizarre condition, however, that is almost certainly a human atavism. There are more than 100 reports in the literature of babies born with tails (http://www.thephora.net/forum/showthread.php?t=9928). Some are no more than fatty appendages, but others consist of extra vertebrae, ligaments and muscle, and can even move - though as most are removed soon after birth, it's not clear whether this movement is voluntary or not.
"This is quite clearly an atavism," says Bernhard Herrmann of the Max Planck Institute for Molecular Genetics in Berlin, Germany, who studies the development of the vertebral column. "The ability to make tails is a feature of all vertebrates."
As the embryo develops and elongates, a series of segments is laid down, he says. The first ones turn into the torso, while later ones become the tail, but exactly the same initial process - and the same set of genes - is involved. In humans the process stops early. But if something disrupts the "stop" signal, the elongation process may continue. "There is an inherent timing mechanism in the embryo that causes the tail to stop growing at the appropriate time for each species," says Andrew Copp of the Institute of Child Health in London, who has helped identify some of the genes involved in tail formation.
Once formed, the embryonic tail in humans self-destructs via a process of programmed cell death, and the vertebrae in the rudimentary tail visible in 5-week embryos fuse to form the coccyx. Human tails could result from excessive elongation, or the failure of the self-destruct mechanism, or maybe a bit of both - the mutations responsible have not been identified.
Whether human tails resemble those of our ape ancestors is unclear. Fossil teeth are all that have been found of most transitional species between monkeys and apes, so when and why our ancestors lost their tails remains a mystery.
Whichever human conditions turn out to be atavisms - and we won't know for sure until the genetics of each of them is unravelled - it's apparent that they are far more common than biologists once believed. They are lurking within all our genomes, ready to emerge if anything goes awry during development. And in some cases, far from being a backward step, they prove to be advantageous and can spread through a species, driving evolution forward by making it go backwards. If humans ever have to return to the trees, our long-lost tails may be returning with us.