PDA

View Full Version : Peak antibiotics?


Petr
04-29-2006, 08:55 AM
Exaggerated obsession with hygiene makes one vulnerable to the backlash of natural order... sense of moderation is required.


http://www.usnews.com/usnews/health/articles/060109/9resist.htm


Bugs Behaving Badly

Antibiotics are aging, and bacteria are learning to fight them off

By Avery Comarow

1/9/06


Last month brought fresh evidence that while small, bacteria can certainly look out for themselves. Clostridium difficile, a microbe that can cause serious digestive illness and death in vulnerable patients in hospitals and nursing homes but rarely bothers healthy adults outside healthcare settings, was blamed by the federal Centers for Disease Control and Prevention for doing just that in four states. Like many other germs, it apparently had mutated, under pressure from antibiotics, into a toxic new strain.

As if that wasn't bad enough, a couple of weeks later, the Journal of the American Medical Association suggested that we had aided the resourceful C. difficile by dosing ourselves with pills such as Pepcid and Prilosec that prevent severe heartburn, or reflux, by lowering the acidity of the stomach's gastric juices. That acidity, noted the authors, keeps the upper part of the digestive tract bug free. By reducing the acidity, the pills lowered the barrier.

Unbeatable. Such news was just the latest in a string of misadventures that illuminate the uncommon adaptive power of bacteria. Until about 25 years ago, most disease-causing germs stood little chance against the stream of antibiotics that had emerged from laboratories during the 1940s and '50s. Top researchers at large pharmaceutical companies truly believed that the days of infectious disease were over.

But the flow of unique new classes of antibiotics ebbed and died in the 1960s. Resistant strains of microbes that had crumbled obediently at the touch of drugs like vancomycin appeared. Now some 2 million hospital patients a year get bacterial infections; about 90,000 of them die. The National Institute of Allergy and Infectious Diseases estimates that more than 70 percent of the bacteria that cause these infections are resistant to one or more antibiotics. That complicates care, inflating the cost of treating an infected patient. And so reports such as these are piling up:

Military service members injured in Iraq and Afghanistan increasingly are coming home with Acinetobacter baumannii, a potent microbe that causes pneumonia and blood infections, in their wounds. Plucked straight from soil or water, the bug is naturally resistant, often to multiple antibiotics. Sometimes physicians have to turn to coliston, a drug rarely used since the 1960s because of the high chance of injuring the kidneys and nervous system.

Gonorrhea used to be easily treatable with penicillin, but the bacterium reponsible, Neisseria gonorrhoeae, long ago shrugged it off. Now the newer quinolone class of antibiotics such as Cipro and Floxin, which became the drugs of choice, are being defeated in the United States and in Australia, Canada, Great Britain, and Hong Kong. It has gotten so bad, J. Todd Weber, director of the CDC' s office of antimicrobial resistance, wrote in a JAMA editorial in November, that the usefulness of quinolone drugs to treat and control gonorrhea "is being lost worldwide because of increasing resistance."

Resistant strains of bacteria usually confined to hospitals are finding their way into local communities. In 2003 and 2005, studies fingered Staphylococcus aureus, a microbe that is blamed for many serious heart and lung infections in hospitals and nursing homes and is resistant to the methicillin class of anti-biotics, as the cause of outbreaks of skin abscesses in high school wrestlers in Indiana, members of a Colorado fencing club, and five players on the St. Louis Rams football team.

Methicillin-resistant S. aureus is being transported into hospitals from outside, not just sent into communities from hospitals. A report to be published later this month in the Journal of Infectious Diseases states that as many as 90 million healthy people, or nearly one third of the U.S. population, carry S. aureus as a passenger in their noses. And in more than 2 million of them, the bug is the resistant strain. Based on cultures of nasal samples taken from some 9,600 individuals selected at random in 2001 and 2002 as part of an ongoing national health and nutrition survey, the study was the first to determine the precise extent to which the microbe has made itself at home throughout the population. The answer, clearly, is: very at home.

Overload. What has exacerbated matters is Americans' well-documented tendency to think they need an antibiotic for every cold or cough or child's sore throat or earache. And physicians tend to go along, arguing that they don't have time to educate patients on the folly of taking an antibiotic. The larger the quantity of antibiotics prescribed, the greater the opportunity for bacteria to form resistant mutations. Yet in an analysis in JAMA published in November, more than half of children who came to a doctor's office, a hospital outpatient department, or an emergency room between 1995 and 2003 because of a sore throat left with an antibiotic.

Such reflexive prescribing is unsound medicine. Most sore throats are caused by viruses, which don't respond to antibiotics, so the majority of the children wouldn't have been helped. And many of the kids who did take an antibiotic, the JAMA analysis found, were prescribed one that was not among those specifically recommended by physician groups and the CDC.

Surely a prescription is justified for an adult who's been coughing for more than a week, is running a fever, and--skip ahead to the next sentence if squeamish--is hacking up greenish phlegm. But no. The largest study to date of the merits of antibiotics for such patients, published in JAMA in June, found the cough didn't go away or the severity of the symptoms lessen any sooner in a group of patients on antibiotics than in another group that didn't get them. "Perhaps it is not a coincidence," suggested family physician Mark Ebell in an accompanying edi-torial, "that manufacturer-sponsored placebo-controlled trials of newer anti-biotics for acute bronchitis in healthy adults are absent from the literature."

Some researchers, among them Stuart Levy, a microbiologist at Tufts University School of Medicine and founder and president of the Alliance for the Prudent Use of Antibiotics, worry about another source of antibiotic resistance: antibacterial household products. Between 300 and 550 germ-fighting products, such as liquid soaps, laundry detergents, and even toothbrushes, have been introduced every year since 1999, according to Datamonitor, a Naples, N.Y., market research firm.

Levy cautions that trying to stamp out germs in healthy households could breed tougher bugs that might also resist anti-biotics. A study he coauthored, published in October in Emerging Infectious Diseases, found no such problem in 224 households after a year of use. But Levy argues: "That wasn't long enough. Vancomycin was used for years before resistance emerged." It's worth noting that the cleaners aren't anything special. The study found them no better at exorcising bacteria than plain soap.

Empty shelves. The solution to larger issues of antibiotic resistance is more and better drugs. If that doesn't happen, warns "Bad Bugs, No Drugs," a report issued in 2004 by a task force of the Infectious Diseases Society of America, whose 8,000 members are mostly physicians and scientists, the country--and the world--face a brewing crisis in which millions of people could die. "The shelf is very sparse," says John Bartlett, a physician who chaired the task force and is founding director of the Center for Civilian Biodefense Strategies at the Johns Hopkins School of Public Health. "When we go on rounds every day, we are continually reminded that we're running out of drugs."

Why few new antibiotics are emerging, says George Talbot, a task force member and consultant to drug manufacturers, is simple: "Big companies decided that there are more fertile fields. They needed to have blockbuster drugs." Antibiotics are expensive to develop--putting a new one on the market would cost at least $800 million and take as long as 10 years--and offer a lower return than that offered by medications for chronic illnesses, such as heart disease, Alzheimer's, and depression. Potent new antibiotics, notes Talbot, "are put on the shelf to be used in reserve. It may make sense clinically, but it's not exactly an incentive to companies to develop new drugs."

The task force concluded that Congress has to give large pharmaceutical manufacturers a good reason, in the form of tax breaks and other financial carrots, to get back into antibiotic R&D. Several bills that would do so, however, languish in committee. And so a perfect storm well may be in the making, as microbes gain in strength while current antibiotics, unbolstered by reinforcements, are defeated one by one.

MUSCLING UP

Two types and one whole class of bacteria are getting tougher to defeat, as shown by the rise in strains found in hospital intensive care units that are resistant to the usual antibiotics.

STRAINS WITH RESISTANCE

Staphylococcus aureus

Enterococci

Pseudomonas aeruginosa

[labels]

0

10

20

30

40

50

60 pct.

1980

2002

1990

Source: Centers for Disease Control and Prevention

Micaelis
04-29-2006, 09:02 AM
Great post, Petr.

Donny the Punk
04-29-2006, 09:05 AM
I might have agreed a while back, based on what I'd read here (http://www.bookcloseouts.com/default.asp?Ntk1=Default&Ntt1=antibiotics&Ntx1=matchall&Nsl=0&Ix=4&R=0316713317B&Rt=22&Nty1=1), but: http://thephora.net/forum/showthread.php?t=6436

Petr
04-29-2006, 09:10 AM
http://www.newscientist.com/article.ns?id=dn5047


Antibiotics linked to huge rise in allergies

* 17:06 27 May 2004
* NewScientist.com news service
* James Randerson, New Orleans


The increasing use of antibiotics to treat disease may be responsible for the rising rates of asthma and allergies. By upsetting the body's normal balance of gut microbes, antibiotics may prevent our immune system from distinguishing between harmless chemicals and real attacks.

"The microbial gut flora is an arm of the immune system," says Gary Huffnagle at the University of Michigan in Ann Arbour. His research group has provided the first experimental evidence in mice that upsetting the gut flora can provoke an allergic response.

Asthma has increased by around 160 per cent globally in the last 20 years. Currently about a quarter of schoolchildren in the US and a third of those in the UK have the condition, but pinning down the causes of the rise has proved difficult. Some researchers have blamed modern dust-free homes, while others have pointed to diet.

Antibiotics have been implicated by some epidemiological studies. For example, the rise in allergies and asthma has tracked widespread antibiotic use. Furthermore, research in Berlin, Germany, has found that both antibiotic treatment and asthma were low in the east compared to the west when the wall came down.

As antibiotic use has increased in the east though, so has asthma. This study is particularly valuable because the politically divided populations were genetically very similar and enjoyed much the same menu.

Now Huffnagle has presented experimental evidence to back up the case. His team gave mice a course of antibiotics before feeding some of them with a yeast which is commonly found on human skin.

With the natural gut bacteria suppressed by the drugs, the yeast became established in the mouse, with no side effects. Over the course of the following two weeks, the researchers treated all the mice with spores from a common fungus. Again, this does not cause disease, but fungal spores can trigger allergies in people.

The mice whose gut flora had been manipulated, experienced a much higher immune response to the spores, suggesting that changes to the collection of microbes in people's guts following antibiotic treatment might also make us more susceptible to allergies. "Suddenly, your ability to ignore a mould spore has gone," Huffnagle told New Scientist.

The team has repeated the experiments with a second strain of mice to show that the effect is not dependent on a particular set of mouse genes. They have also used a different molecule to produce the allergic response - an egg protein from chickens called ovalbumin that is commonly used in allergy research.

In this case, when the team looked at the animals' lung linings under a microscope the effect of the over-active immune response was striking. "Their lungs are shredded, absolutely shredded. I'm sure they can't breath," says Huffnagle.

He speculates that our gut bacteria are somehow involved in training the immune system to ignore harmless molecules that wind up in our stomach. Precisely how they do this is a mystery though.

"He's on to a very special track," says Juneann Murphy an expert in stomach bacteria at the University of Oklahoma in Oklahoma City. "No one else has been able to make the connections before."

She says the findings reinforce the message that antibiotics should be used only when absolutely necessary. She also suggests that patients who have just finished antibiotic treatment should also receive "probiotic" tablets containing "good" gut bacteria.

Eating foods such as raw fruit and vegetables also helps to restore the natural balance in our guts. "Once you are done with the antibiotics you are not finished," adds Huffnagle. "You need to recover from the treatment itself."


The research was presented at the American Society for Microbiology general meeting in New Orleans on Wednesday.

Petr
04-29-2006, 09:19 AM
http://www.cnn.com/2004/HEALTH/02/17/antibiotics.cancer/


Study links antibiotics, breast cancer

Wednesday, February 18, 2004 Posted: 9:09 AM EST (1409 GMT)


(CNN) -- Increased use of antibiotics may heighten women's risk of breast cancer, a study looking at possible connections between the two suggests.

Researchers found that women who took antibiotics for more than 500 days or who had more than 25 prescriptions in the course of a 17-year period more than doubled their risk of breast cancer compared with women who had not taken any antibiotics.

The fewer the days on antibiotics resulted in a smaller risk, the authors wrote in the study appearing in Wednesday's Journal of the American Medical Association.

"It's as strong as any of the risk factors that we know," said Dr. Roberta Ness of the University of Pittsburgh Graduate School of Public Health, who is author of an editorial accompanying the study.

"To put it into perspective, the risk for developing breast cancer from hormone replacement use is about a 30 [percent] to 40 percent increase in risk. And here we're talking about a doubling in risk of those women who are using chronic antibiotics."

But researchers caution that the findings do not mean antibiotics cause breast cancer.

"These results only show that there is an association between the two," co-author Dr. Stephen Taplin of the National Cancer Institute said in a statement. "More studies must be conducted to determine whether there is indeed a direct cause-and-effect relationship."

Taking computerized pharmacy and breast cancer screening data in Washington state, researchers compared the use of some of the most frequently prescribed antibiotics by 2,266 women with breast cancer and almost 8,000 without the disease.

Why antibiotics may possibly increase breast cancer risk is still a mystery, researchers said. The conditions that necessitated the antibiotics in the first place may have put the women at higher risk. Or, researchers said, the women in the study who had never taken antibiotics might have been generally healthier overall.

Another theory suggested in the study involves the way antibiotics affect bacteria in the intestine, which may disable possible cancer-fighting properties of some foods. Other explanations involve the effect of antibiotics on the body's immune system.

The research is not the first to show an association between antibiotics and a higher risk of breast cancer, the second most deadly cancer in women. In 1999, a Finnish study of almost 10,000 women found similar results.

Authors of the new study included members from the Fred Hutchinson Cancer Research Center, Group Health Cooperative and University of Washington -- all in Seattle -- and the National Cancer Institute, based in Bethesda, Maryland.

According to the Centers for Disease Control and Prevention, the overuse of antibiotics has exploded in the past 10 years, with the public mistakenly taking the medicine for colds, flu and coughs. These types of illnesses are caused by viruses and cannot be helped with antibiotics, which fight bacterial infections.

Lead study author Dr. Christine Velicer of the Group Health Cooperative said that more research needs to be done to understand any link between breast cancer and antibiotics and that the drugs remain an important health tool.

"At this point, continued, prudent use of antibiotics and recognizing the substantial benefits that antibiotics have is an important way to go," Velicer said.

Petr
04-29-2006, 09:29 AM
And btw, regarding the claims that this represents "evolution in action":

For “fish to turn into philosophers” requires a mechanism for creating new and useful genetic information. That does not happen when some germs resist antibiotics. Either:

1. the drug-resistant germs were already in place before the antibiotic was used, or

2. the DNA information was already there in another bacterium and transferred (in the form of a plasmid via a tiny tube) or

3. where it has arisen from a genetic copying mistake (mutation), the information decreases.

In summary, apply antibiotics to a population of bacteria and those lacking resistance are killed; any genetic information they carry is eliminated (i.e., the surviving gene pool carries less information, the opposite of what molecules-to-man evolution requires). Such natural “selection” (first described by creationist Edward Blyth, incidentally) is a fact of life, but is sadly lacking as a means for pond scum to have allegedly turned into princes.

http://www.answersingenesis.org/docs2005/0712letter_template.asp

Resistance to antibiotics is a great example of how natural selection is a conservative, not progressive phenomenon.


Petr

Sinclair
04-29-2006, 02:43 PM
Antibiotics and antibacterial agents, overused, are causing great problems. "Subtherapeutic" antibiotics given to factory-farmed animals (to keep them from getting sick in the really close quarters they're in) play a big role in this.

I believe there is a movement in the US to ban use of an antibacterial agent in hand soap, because it's creating resistance, and most people don't scrub long enough for the agent to actually take effect.

Ahknaton
04-29-2006, 03:00 PM
Resistance to antibiotics is a great example of how natural selection is a conservative, not progressive phenomenon.
That's a false dichotomy. Natural selection is both a conservative phenomenon (weeding out deleterious mutations) and a progressive one (proliferating beneficial ones).

Petr
04-29-2006, 07:50 PM
This piece even mentions the "low-hanging fruit" theory:


http://www.nature.com/news/2004/041018/pf/431892a_pf.html


Antibiotics: A shot in the arm

Antibiotics are failing and drug companies have all but stopped developing new ones. Will conquered diseases come back to haunt us? Martin Leeb examines one plan to avert the crisis.

...

"Even if the IDSA plan is adopted, there are still considerable scientific hurdles to clear. Nearly all the existing classes of antibiotic are half a century old. Most antibiotics are merely modifications of existing ones, which does not always solve the problem of resistance. Since 1962, only two new classes — an oxazolidinone (linezolid) in 2000 and a cyclic lipopeptide(daptomycin) in 2003 — have been approved for use.

"We have already collected the low-hanging fruit," explains Projan. But in every orchard the tastiest fruits hang the highest. The proposed incentives, say Projan and others, may provide a ladder to reach them."


Petr

Fade the Butcher
04-29-2006, 08:24 PM
Exaggerated obsession with hygiene makes one vulnerable to the backlash of natural order... sense of moderation is required.


I still haven't figured out why anyone takes these religious cranks seriously. How many antibiotics have they ever created?

Petr
04-29-2006, 08:28 PM
I still haven't figured out why anyone takes these religious cranks seriously. How many antibiotics have they ever created?
Pissy li'l Fade made another diversion.


Petr

Fade the Butcher
04-29-2006, 09:48 PM
Pissy li'l Fade made another diversion.

Antibiotics were always in the Bible. The dinosaurs were too. :p

Sinclair
04-29-2006, 10:37 PM
It should be mentioned that yogourt seems to contain a good amount of probiotics... Eat yogourt.

Petr
05-02-2006, 12:19 PM
From Gene Expression:

http://www.gnxp.com/blog/2006/04/disease-mongers.php


Sunday, April 30, 2006

Disease Mongers


You may not be interested in Big Pharma, but Big Pharma is interested in you.

PLoS Medicine has an issue on the pharmaceutical industry's disease mongering. I liked this article on serotonin & depression, namely the disconnect between the muddy consensus within neuroscience (it may or may not be somehow involved) and the boastful direct-to-consumer advertisements (if you're depressed, you've probably got low levels of stuff we're happy to sell you). Given how little we understand about the brain compared to other organs; given how little we understand of the long-term effects of brain drugs; and given that we have recent evidence that -- prepare to be shocked -- Big Pharma honchos will try to keep harmful side-effects under wraps lest their profits suffer; I'd say it's a good bet to stay away from the stuff.

That raises the question: should we keep others from using such things as well? It's their body and their money, correct? Yes, but under the present circumstances, a good case could be made against their use -- namely, that they wouldn't have seen a doctor and asked for medicine had not the PR & advertising industries knowingly mislead them as to the status and/or cause of their condition. Again, this is crucial if they're being mislead as to the long-term consequences, which are potentially great when we're talking about drugs that affect an organ we understand poorly. Since it's easier to screw up a complex system than to improve it, we should adopt that as the null hypothesis for brain drugs, which only longitudinal studies could disconfirm.

Now, if the disease were life-threatening, like liver failure, you could argue that if the patient consents, dire measures could be taken -- after all, they face imminent death in any event, and basic work (where doctors will break some eggs) is needed in order to fine-tune the art of liver transplants before they become safe. In such cases, maybe. But anxiety and depression, let alone the conditions treated by "lifestyle drugs" such as Viagra, are not in the same league as liver failure. Moreover, you could make a similar argument to one for closing up most plastic surgery offices: that is, they represent a failure of the market to allocate resources where they're needed. The smartest, most highly motivated doctors should be where health is lowest (mainly the elderly and poor), not making Orange County housewives look like space aliens with shotput boobs.

On the other end of the spectrum in the PLoS issue, there's this review of Female Sexual Dysfunction from a feminist / social constructionist p-o-v. Typical of critiques against "reductionist" approaches, it gets some of it right but for the wrong reasons. She's right that FSD is mostly made-up by Big Pharma and that men & women are different, though not due to social forces but to different biology. If natural selection allowed the average female to have a sexual appetite equal to that of the average male -- say bye-bye to the advantage of female choice. Ditto for reliability of orgasm -- if it were as simple as the male version, any old bum could win her over provided his body was warm.

In any case, what do the readers think the best strategy is for keeping Big Pharma on a tight leash? Clearly, it's not rationally arguing the issue with them, as they already understand the shortcomings but don't care. So, some sort of force or threat of force is needed -- not physical, obviously. I should clarify: what can we do? Surely the FDA could enact harsh measures, but they've proven to be wimps.


posted by agnostic | 6:26 PM | Comments (31) |

Jimbo Gomez
05-02-2006, 01:52 PM
Fade: would you mind staying on topic.